Interesting links

With discovair we are developing the lung for the human cell atlas. As they describe it themselves: "To create comprehensive reference maps of all human cells—the fundamental units of life—as a basis for both understanding human health and diagnosing, monitoring, and treating disease." If you want to visit the Human Cell Atlas, or other interesting reads or find more about our data, see the links below:

General

Human cell atlas

About human cell atlas

Link

FASTGenomics

Platform for single-cell research

Link

Data sets

Human Cell Atlas DCP

HCA Data portal

Link

Single cell expression Atlas

Single cell gene expression across species

Link

Broad single cell portal

Reducing barriers and accelerating single-cell research

Link

Lung Cell Atlas

Nature Medicine paper

Link

Cell Atlas of the Airway Wall

Pascal Barbry

Link

Cell Atlas of Developing Lung

Cell types (clusters) in the human developing lung

Link

Tissue Stability Atlas

Including lung

Link

IPF cell atlas

Idiopathic Pulmonary Fibrosis Cell Atlas

Link

Protocols

Cell dissociation of fresh human lung tissue for single-cell RNA-seq

Ilias Angelidis, Maximilian Strunz, Herbert Schiller

Link to Protocol

Cell dissociation from nasal and bronchial brushings with cold-active protease for single-cell RNA- seq V.2

Laure-Emmanuelle Zaragosi, Pascal Barbry

Link to Protocol

Cell dissociation from airway biopsies with cold-active protease for single-cell RNA-seq

Laure-Emmanuelle Zaragosi, Pascal Barbry

Link to Protocol

Single-cell suspension preparation from Human bronchial biopsies to perform scRNA-sequencing using 10x chromium

Martijn Nawijn, Leonie Apperloo

Link to Protocol

Cell dissociation from nasal, bronchial and tracheal brushings with cold-active protease for single-cell RNA-seq

Kaylee B Worlock, Masahiro Yoshida, Kerstin Meyer, Marko Z. Nikolić

Link to Protocol

SCRINSHOT V.2

Alexandros Sountoulidis, Andreas Liontos, Hong Phuong Nguyen, Alexandra Firsova, Athanasios Fysikopoulos, Xiaoyan Qian, Werner Seeger, Erik Sundström, Mats Nilsson, Christos Samakovlis

Link to Protocol

HybISS: Hybridization-based In Situ Sequencing

Daniel Gyllborg, Mats Nilsson

Link to Protocol

In situ sequencing for RNA analysis in tissue sections V.2

Chika Yokota, Daniel Gyllborg, Mats Nilsson

Link to Protocol

CGAP Human Lung Dissociation - Tissue Stability Study

Anna Wilbrey-Clark, Adam Hunter

Link to Protocol
This project is funded by
Grant no. 874656
EU

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